Book V
- 17-25 (Adam's morning song)
- 28-93 (Eve relates her dream)
- 99-121 (Adam's statements on reason, fancy, the five senses and "mimic fancy")
- 145-149 ("unmediated" prayer in the prelapsarian world)
- 156-159 *(God is in all things...)
- 171-208 *(the whole universe and earth offer Him praise)
- 235-245 *(God reiterates man's free will to choose and, importantly, He releases His culpability)
- 262 (Galileo is named! see note!)
- 265-285 (Raphael flies to earth; the phoenix)
- 332-349 (Eve gathers for the feast)
- 359-360 (Adam is servile)
- 404-443 (Raphael on the necessity of nourishment for all creation)
- 452-456 *(the 2nd request for knowledge!)
- 469-479 *(on creation: its origin and end in God; the spheres of "refinement")
- 486-490 (more on creation)
- 496-503 *(man will ascend, if only obedient by choice and if in a state of grace/love)
- 507-512 *(the golden chain of existence; free will)
- 524-534 (indeed man is perfect, yet not immutable)
- 574-576 *(earth as a shadow of Heaven)
- 580-582 (see note, Milton debates time!)
- 603-608 (Christ is anointed)
- 657-693 *(Satan's envy and resolve to revolt)
- 710 (he took with him the third part of Heaven's "stock," see note)
- 760-802 *(Satan's mount and his speech to his army arguing against God's rule)
- 812-822 *(Abdiel refuses Satan's argument)
- 853-863 *(Satan's rebuttal, "self-begot")
- 886-888 *(the golden scepter to an iron rod)
Book VI
- 1-25 *(Abdiel returns to God, witnesses His army and is met by cheers)
- 41-43 (reason and merit, see notes)
- 78-187 *(Satan's army; first day's battle beings; Abdiel and Satan exchange heated words on the battlefield; Abdiel proves a defense of servitude)
- 262-280 *(Michael calls to Satan, exposing his evil and falsehood)
- 291 (Satan thinks he can "turn Heaven into hell"!)
- 320-353 *(Satan is wounded by Michael, yet he is hurt in way beyond corporal pains; a commentary on the angels' ethereal substance of which they are 'made')
- 378-380 (the erasure of the rebellious from the books of Heaven (cf. 1.361-62))
- 406-408 (night falls; first day's battle ends)
- 428-532 *("fallible," an exemplar of Satan's falsehood; pain, though not mortal in threat; "weapons more violent;" mine the "ethereous mold" for the means to make gunpowder ("blackest grain"); the second day's battle begins)
- 558-595 *(Satan unveils his cannons and fires!)
- 635-670 *(Heaven's army rallies, they drop their weapons and throw mountains, thus all Heaven goes to "wrack"!)
- 699-718 *(on the third day's battle Christ will end the war, God professes)
- 748-770 (sunrise on the third day; Heaven's army reassembles)
- 781-784 (Christ restores Heaven to its original)
- 832-834 (all Heaven shakes, except the throne of God)
- 838-879 *(the rebels drop their weapons; (take special note of 864); they throw themselves out of Heaven
- 900-911 *(one last warning to our first parents via Raphael)